TASTI (Taxa with Ancestral structure Species Tree Inference)
An R program that implements the maximum likelihood estimator of species trees in the presence of ancestral population structure of Koch and DeGiorgio (2019).

VolcanoFinder
A program written in C that can perform genomic scans for adaptive introgression using the composite likelihood ratio test of Setter et al. (2019).

LASSI (Likelhood-based Approach for Selective Sweep Inference)
A Python script that implements the likelihood ratio T statistic of Harris and DeGiorgio (2019) for detecting selective sweeps and inferring their softness.

BalLerMix (BALancing selection LikElihood Ratio MIXture models)
A Python script that can perform genomic scans for balancing selection using the composite likelihood ratio B statistics of Cheng and DeGiorgio (2019).

SS-X12
A Python script that implements the classifier SS-H12 of Harris and DeGiorgio (2019) for detecting shared selective sweeps, and classifying them as ancestral or covergenent, as well as hard or soft.

Trendsetter
A Python script that implements the classifier Trendsetter of Mughal and DeGiorgio (2019) for classifying genomic regions as neutral, hard sweep, or soft sweep using the spatial distribution of summary statistics around a test site.

MULLET (MULti-species LikElihood Tests)
A program written in C that can perform scans for ancient multi-species balancing selection in the absence of trans-species polymorphism using the composite likelihood ratio tests of Cheng and DeGiorgio (2019).

MuteBaSS (MUlTi-spEcies BAlancing Selection Summaries)
A Python script that computes multi-species variants of HKA and NCD for detecting long-term balancing selection from Cheng and DeGiorgio (2019).

CalcABS
A Python script that can perform genomic scans for ancestral selective sweeps using the ancestral branch statistic (ABS) of Cheng et al. (2017).

BestHet
An R script that computes the unbiased estimator of expected heterozygosity of Harris and DeGiorgio (2017) at a locus, as well as Fst and the locus-specific branch length, which are functions of expected heterozygosity.

SweepFinder2
A program written in C that can perform genomic scans for recent selective sweeps selection while controlling for background selection and mutation rate variation (DeGiorgio et al. 2016).

BALLET (BALancing selection LikElihood Test)
A program written in C that can perform genomic scans for balancing selection using the composite likelihood ratio tests of DeGiorgio et al. (2014).